Asymmetry in the structure of the ABC transporter-binding protein complex BtuCD-BtuF

BtuCD is an adenosine triphosphate-binding cassette (ABC) transporter that translocates vitamin B12 from the periplasmic binding protein BtuF into the cytoplasm of Escherichia coli. The 2.6 angstrom crystal structure of a complex BtuCD-F reveals substantial conformational changes as compared with the previously reported structures of BtuCD and BtuF. The lobes of BtuF are spread apart, and B12 is displaced from the binding pocket. The transmembrane BtuC subunits reveal two distinct conformations, and the translocation pathway is closed to both sides of the membrane. Electron paramagnetic resonance spectra of spin-labeled cysteine mutants reconstituted in proteoliposomes are consistent with the conformation of BtuCD-F that was observed in the crystal structure. A comparison with BtuCD and the homologous HI1470/71 protein suggests that the structure of BtuCD-F may reflect a posttranslocation intermediate.     

What determines the scale of landscape effect on tropical arboreal mammals?

Landscape Ecology - Biodiversity patterns depend on landscape structure, but the spatial scale at which such dependence is strongest (scale of effect, SoE) remains poorly understood, especially for...     

Is risk-based,sustainable sediment management consistent with European policy?

Background, aims and scope  One issue that remains particularly problematic for integrated and sustainable sediment management is that sediment plays differing roles in various sectoral, regulatory and statutory objectives. This means that across Europe, the level of consideration afforded to sediment management has thus far been primarily left to the discretion of individual countries and agencies. One of the consequences of the complex way in which sediments are regulated in Europe, and a possible over-reliance on the precautionary principle, is that there appears to be less regulatory acceptance of risk-based (rather than mass-based or chemical threshold-based) sediment remedial decisions, and thus resistance to some of the risk-based and in situ remedial technologies currently favoured in North America; “presumptive remedies” are being pushed by a number of agencies, and in-place and risk-based management are meeting great resistance. This summary discusses some of the current and emerging European regulations and strategies and their implications for risk-based sediment management. Conclusions, recommendations and perspectives  There are numerous examples of ex situ remedial strategies in Europe, where sediments are either treated or contained (and increasingly, considered for beneficial use), but very few examples of in situ management. However, the risk-based evaluation of ALL remedial options is entirely consistent with European environmental policy. In fact, in some cases, presumptive removal of sediments can result in greater risks to human health and the environment than management in place, and thus a failure to meet Europe’s ambitious environmental objectives. Decisions that only address a single, sectoral regulatory driver (such as a desire to remove contaminants from a waterbody) may result in a net detriment to the environment. The European Commission has stated that decisions and policies should be continuously evaluated in the light of emerging science and experience, and, where possible, rigorous science-based risk evaluation should take the place of the application of conservative safety factors. Whilst not specifically addressing sediment management, various European Directives and initiatives set out principles for the selection of land-based remedial options that are consistent with a number of international consensus guidance documents on the site-specific, risk-based selection of contaminated sediment remedial options. Although there are numerous technical differences, the fundamental risk- and cost-based principles being applied to land management should be transferable to sediment management decision frameworks. However, whilst the use of risk-based decision criteria is now well-established (either in principle or in practice) in Europe for soil remedial decisions, these principles have not yet been translated to generally applied decision frameworks or guidance for contaminated sediment management in Europe. There is no reason, however, why they should not be.     

Olfactory perception of cysteine-S-conjugates from fruits and vegetables

Volatile sulfur compounds have a low odor threshold, and their presence at microgram per kilogram levels in fruits and vegetables influences odor quality. Sensory analysis demonstrates that naturally occurring, odorless cysteine- S-conjugates such as S-( R/ S)-3-(1-hexanol)- l-cysteine in wine, S-(1-propyl)- l-cysteine in onion, and S-(( R/ S)-2-heptyl)- l-cysteine in bell pepper are transformed into volatile thiols in the mouth by microflora. The time delay in smelling these volatile thiols was 20-30 s, and persistent perception of their odor occurred for 3 min. The cysteine- S-conjugates are transformed in free thiol by anaerobes. The mouth acts as a reactor, adding another dimension to odor perception, and saliva modulates flavors by trapping free thiols.     

Transient elevation of carbon dioxide modifies the microbial community composition in a semi-arid grassland

Using open-top chambers (OTC) on the shortgrass steppe in northern Colorado, changes of microbial community composition were followed over the latter 3 years of a 5-year study of elevated atmospheric CO₂ as well as during 12 months after CO₂ amendment ended. The experiment was composed of nine experimental plots: three chambered plots maintained at ambient CO₂ levels of 360±20 μmol mol^?1 (ambient treatment), three chambered plots maintained at 720±20 μmol mol^?1 CO₂ (elevated treatment) and three unchambered plots. The abundance of fungal phospholipid fatty acids (PLFAs) shifted in the shortgrass steppe under the influence of elevation of CO₂ over the period of 3 years. Whereas the content of the fungal signature molecule (18:2ω6) was similar in soils of the ambient and elevated treatments in the third year of the experiment, CO₂ treatment increased the content of 18:2ω6 by around 60% during the two subsequent years. The shift of microbial community composition towards a more fungal dominated community was likely due to slowly changing substrate quality; plant community forage quality declined under elevated CO₂ because of a decline of N in all tested species as well as shift in species composition towards greater abundance of the low forage quality species (Stipa comata). In the year after which CO₂ enrichment had ceased, abundances of fungal and bacterial PLFAs in the post-CO₂ treatment plots shifted slowly back towards the control plots. Therefore, quantity and quality of available substrates had not changed sufficiently to shift the microbial community permanently to a fungal dominated community. We conclude from PLFA composition of soil microorganisms during the CO₂ elevation experiment and during the subsequent year after cessation of CO₂ treatment that a shift towards a fungal dominated system under higher CO₂ concentrations may slow down C cycling in soils and therefore enhance C sequestration in the shortgrass steppe in future CO₂-enriched atmospheres.     

Nitrogen availability, local light regime and leaf rank effects on the amount and sources of N allocated within the foliage of young walnut (Juglans nigra x regia) trees

Early season leaf growth depends largely on nitrogen (N) provided by remobilization from storage, and many studies have tested the effect of N availability to roots on the amount of N provided for new leaf development by remobilization. Although it is well known that the light regime experienced by a leaf influences the amount of N per unit leaf area (LA), the effect of the local light regime on the amount of N derived either directly from root uptake or from remobilization for early season leaf growth has never been tested at an intra- canopy scale. The objective of this study was to quantify the relative importance of (1) N availability to roots, (2) local light regime experienced by the foliage (at the shoot scale) and (3) leaf rank along the shoot, on the total amount of N allocated to leaves and on the proportions of N provided by remobilization and root uptake. To quantify the importance of N uptake and remobilization as sources of leaf N, potted hybrid walnut trees (Juglans nigra L. x regia L.) were grown outdoors in sand and fed with a labeled ((15)N) nutrient solution. By removing the apical bud, the trees were manipulated to produce only two shoots. The experimental design had two factors: (1) high (HN; 8 mol N m(-3)) and low (LN; 2 mol N m(-3)) N availability; and (2) high (HL; 90% of incident photosynthetically active photon flux (PPF)) and low (LL; 10% of incident PPF) light. Total leaf N per tree was unaffected by either N availability or irradiance. The HN treatment increased the amount of leaf N derived from root uptake at the whole-tree scale (typically around 8 and 2% in the HN and LN treatments, respectively). Nitrogen allocation within foliage of individual trees was controlled by the local light regime, which strongly affected individual leaf characteristics as leaf mass per unit LA and area- based amount of leaf (N(a)). Decreasing the light availability to a branch decreased the amount of N allocated to it, benefiting the less shaded branches. In contrast, shading of the lower branch did not affect the fraction of total leaf N remobilized for either the lower, shaded branch or the upper, unshaded branch. The relevance of these findings for tree growth modeling is discussed.     

Lysimeter experiment to investigate the potential influence of diffusion-limited sorption on pesticide availability for leaching

Pesticide leaching from soil has been shown to decrease with increasing time from application to irrigation. It is hypothesized that the availability of compounds for leaching decreases due to diffusion and sorption inside soil aggregates. Previous work showed that pesticide sorption inside soil aggregates increases significantly during the first days after application. The study presented here tested if diffusion into aggregates could explain the leaching of four aged pesticides from manually irrigated soil cores. Azoxystrobin, chlorotoluron, cyanazine, and bentazone were applied to 30 undisturbed cores (25 cm long, 23.7 cm diameter) from a clay loam soil. The soil cores were irrigated 1, 3, 7, 14, and 28 days after application. Leachate was collected and analyzed. The amount of pesticide found in leachate decreased rapidly with time from application. Pesticide losses in leachate declined 2.5-27 times faster than total residues in soil. The decline was 4-5 times faster for the more strongly sorbed pesticides (azoxystrobin, chlorotoluron, and cyanazine) than for bentazone. In previous work, we derived a model to describe sorption and diffusion of the pesticides in small aggregates from the same soil. The diffusion model was used here to describe sorption inside the large aggregates in the soil cores and extended to describe pesticide leaching by interaggregate flow. The model showed a significant decline in leaching with time from application, which supports the theory that diffusion-limited sorption in aggregates influences the availability for pesticide leaching, although it does not exclude alternative explanations for this decline. The model well described the decline in leaching for three out of four pesticides. The interaggregate transport model could, however, not account for the amount of preferential flow in the cores and underestimated the leaching of bentazone.     

Aroma extraction dilution analysis of Sauternes wines. Key role of polyfunctional thiols

The aim of the present work was to investigate Sauternes wine aromas. In all wine extracts, polyfunctional thiols were revealed to have a huge impact. A very strong bacon-petroleum odor emerged at RI = 845 from a CP-Sil5-CB column. Two thiols proved to participate in this perception: 3-methyl-3-sulfanylbutanal and 2-methylfuran-3-thiol. A strong synergetic effect was evidenced between the two compounds. The former, never mentioned before in wines, and not found in the musts of this study, is most probably synthesized during fermentation. 3-Methylbut-2-ene-1-thiol, 3-sulfanylpropyl acetate, 3-sulfanylhexan-1-ol, and 3-sulfanylheptanal also contribute to the global aromas of Sauternes wines. Among other key odorants, the presence of a varietal aroma (alpha-terpineol), sotolon, fermentation alcohols (3-methylbutan-1-ol and 2-phenylethanol) and esters (ethyl butyrate, ethyl hexanoate, and ethyl isovalerate), carbonyls (trans-non-2-enal and beta-damascenone), and wood flavors (guaiacol, vanillin, eugenol, beta-methyl-gamma-octalactone, and Furaneol) is worth stressing.     

Potato Tuber Greening: a Review of Predisposing Factors,Management and Future Challenges

Greening is a major cause of quality loss in potato tubers. As underground stems, potato tubers are non-photosynthetic plant organs that lack photosynthetic machinery. However, after light exposure, amyloplasts convert to chloroplasts in tuber peripheral cell layers, which cause the accumulation of the green photosynthetic pigment, chlorophyll. Tuber greening can be impacted by genetic, cultural, physiological and environmental factors including planting depth, tuber physiological age, temperature, atmospheric oxygen levels, and lighting conditions. Numerous studies have been devoted to understand and control this costly defect for the potato industry. This review brings together the available knowledge on light-induced greening, from causes to solutions and suggestions on further research with a focus on identifying the underlying mechanisms of tuber greening.